STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI49363.1Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (455 aa)    
Predicted Functional Partners:
EHI47980.1
PFAM: Sel1 repeat.
  
     0.710
EHI47934.1
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.709
EHI47960.1
Flagellar hook-basal body proteins; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins.
  
     0.686
EHI48327.1
PFAM: Phage integrase family.
  
     0.647
EHI47935.1
PFAM: Flagellar hook-length control protein FliK.
  
     0.641
EHI47945.1
Flagellin-specific chaperone FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
  
     0.555
EHI47933.1
PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
  
     0.531
EHI47969.1
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.528
EHI47972.1
PFAM: Protein of unknown function, DUF400.
  
     0.526
EHI47953.1
Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; Flagellin hook IN motif; TIGRFAM: flagellar hook-associated protein 3.
  
     0.525
Your Current Organism:
SAR116 cluster
NCBI taxonomy Id: 909943
Other names: S. cluster alpha proteobacterium HIMB100, SAR116 cluster alpha proteobacterium HIMB100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.