STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB93293.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (231 aa)    
Predicted Functional Partners:
SFD63803.1
Signal transduction histidine kinase.
  
 0.995
SFB93314.1
Signal transduction histidine kinase.
 0.968
SFC77967.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.892
SFD29417.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.851
SFC70534.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.847
SFC67062.1
Signal transduction histidine kinase.
 
 0.846
SFD76142.1
Signal transduction histidine kinase.
 
  0.843
SFC26746.1
Signal transduction histidine kinase.
  
  0.842
SFD39258.1
Signal transduction histidine kinase.
 
  0.836
SFC37849.1
Signal transduction histidine kinase.
  
  0.832
Your Current Organism:
Streptomyces aidingensis
NCBI taxonomy Id: 910347
Other names: CGMCC 4.5739, NBRC 108211, S. aidingensis, Streptomyces aidingensis Xia et al. 2013, Streptomyces sp. TRM 46012, strain TRM 46012
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