STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC61739.1HD domain-containing protein. (202 aa)    
Predicted Functional Partners:
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.773
SFC61692.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SFC61705.1
Hypothetical protein.
       0.773
SFC61817.1
Hypothetical protein.
  
     0.711
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.701
SFC61636.1
Probable phosphoglycerate mutase.
       0.695
SFC61584.1
S-adenosylmethionine synthetase.
       0.693
SFC61610.1
Streptomycin 6-kinase.
       0.693
SFB87847.1
Hypothetical protein.
  
     0.657
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.507
Your Current Organism:
Streptomyces aidingensis
NCBI taxonomy Id: 910347
Other names: CGMCC 4.5739, NBRC 108211, S. aidingensis, Streptomyces aidingensis Xia et al. 2013, Streptomyces sp. TRM 46012, strain TRM 46012
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