STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORV87785.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)    
Predicted Functional Partners:
ORV87783.1
Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
ORV87784.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
ORV87789.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
ORV87790.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.920
ORV87922.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.882
rpmB-2
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.842
ORV87782.1
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
ORV86172.1
Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.731
ORV87788.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.
  
   
 0.668
rpsN-2
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.659
Your Current Organism:
Mycolicibacterium iranicum
NCBI taxonomy Id: 912594
Other names: CCUG 62053, DSM 45541, JCM 17461, M. iranicum, Mycobacterium iranicum, Mycobacterium iranicum Shojaei et al. 2013, Mycobacterium sp. CCUG 52297, Mycobacterium sp. FI-05198, Mycobacterium sp. GN10803, Mycobacterium sp. HNTM87, Mycobacterium sp. M05, Mycobacterium sp. NLA001001296, Mycobacterium sp. OPBG12013762, Mycolicibacterium iranicum (Shojaei et al. 2013) Gupta et al. 2018, strain M05
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.