STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORV83420.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)    
Predicted Functional Partners:
ORV87951.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.749
ORV90854.1
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
   
    0.740
ORV88864.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.595
ORV83419.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.595
xerC
Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.571
ORV82620.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.571
ORV82619.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.524
Your Current Organism:
Mycolicibacterium iranicum
NCBI taxonomy Id: 912594
Other names: CCUG 62053, DSM 45541, JCM 17461, M. iranicum, Mycobacterium iranicum, Mycobacterium iranicum Shojaei et al. 2013, Mycobacterium sp. CCUG 52297, Mycobacterium sp. FI-05198, Mycobacterium sp. GN10803, Mycobacterium sp. HNTM87, Mycobacterium sp. M05, Mycobacterium sp. NLA001001296, Mycobacterium sp. OPBG12013762, Mycolicibacterium iranicum (Shojaei et al. 2013) Gupta et al. 2018, strain M05
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