Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCRIBLOW QUALITY PROTEIN: protein scribble homolog. (1441 aa)    
Predicted Functional Partners:
PIM3
Proto-oncogene serine/threonine-protein kinase Pim-3.
    
 0.943
PUF60
Poly(U)-binding-splicing factor PUF60 isoform X1.
   
 
 0.927
EFNB1
Ephrin-B1.
   
  
 0.909
BICC1
Protein bicaudal C homolog 1 isoform X1.
      
 0.864
TRIM71
Tripartite motif containing 71.
    
 0.819
CENPJ
Centromere protein J.
    
 0.800
CPEB1
Cytoplasmic polyadenylation element-binding protein 1 isoform X1.
      
 0.795
CENPS
Centromere protein S.
     
 0.746
PHLPP1
PH domain and leucine-rich repeat-containing protein phosphatase.
    
   0.714
MCC
Colorectal mutant cancer protein isoform X2.
    
 
 0.666
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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