Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPF2Ribosome production factor 2 homolog. (306 aa)    
Predicted Functional Partners:
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 
 0.993
MRTO4
MRNA turnover protein 4 homolog.
   
 
 0.992
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.992
RSL24D1
Probable ribosome biogenesis protein RLP24.
   
 
 0.991
BRIX1
Ribosome biogenesis protein BRX1 homolog.
   
 
 0.991
GNL3
G protein nucleolar 3.
   
 
 0.991
BOP1
BOP1 ribosomal biogenesis factor.
   
 
 0.991
PUM3
Pumilio homology domain family member 6.
   
 
 0.990
NSA2
Ribosome biogenesis protein NSA2 homolog.
   
 
 0.989
GTPBP4
Nucleolar GTP-binding protein 1.
   
 
 0.989
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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