Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMAN2Vesicular integral-membrane protein VIP36. (338 aa)    
Predicted Functional Partners:
TMED2
Transmembrane emp24 domain-containing protein 2.
   
 0.778
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 0.760
GOLGA2
Golgin subfamily A member 2 isoform X1.
   
 
 0.637
SEC23A
Protein transport protein Sec23A.
    
 0.630
SEC23B
Protein transport protein Sec23B.
    
 0.630
LMAN1
Protein ERGIC-53 isoform X1.
   
 0.620
BET1
Blocked early in transport 1.
   
 
 0.614
SEC22C
SEC22 vesicle trafficking protein A/C.
    
 0.604
SEC22A
Vesicle-trafficking protein SEC22a isoform X1.
    
 0.604
MCFD2
Multiple coagulation factor deficiency protein 2 isoform X1.
     
 0.599
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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