STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC40Pre-mRNA-processing factor 17. (565 aa)    
Predicted Functional Partners:
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.
   
 0.998
PRPF18
Pre-mRNA-splicing factor 18.
   
 0.996
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.995
CWC22
Pre-mRNA-splicing factor CWC22 homolog.
   
 0.993
PPIL1
Peptidyl-prolyl cis-trans isomerase-like 1.
    
 0.993
SLU7
Pre-mRNA-splicing factor SLU7 isoform X2.
   
 0.993
CWC25
Pre-mRNA-splicing factor CWC25 homolog isoform X1.
    
 0.991
DHX8
ATP-dependent RNA helicase DHX8/PRP22.
   
 0.988
CCDC12
Coiled-coil domain-containing protein 12.
    
  0.986
DHX35
Probable ATP-dependent RNA helicase DHX35 isoform X2.
   
 0.980
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.