STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TIGD5Tigger transposable element-derived protein 5. (548 aa)    
Predicted Functional Partners:
HARBI1
Putative nuclease HARBI1.
      
 0.685
TIGD4
Tigger transposable element-derived protein 4.
      
 0.682
UBE2I
Ubiquitin-conjugating enzyme E2 I.
    
  0.667
NAIF1
Nuclear apoptosis-inducing factor 1.
   
  
 0.658
LOC103823704
[histone H3]-lysine36 N-dimethyltransferase SETMAR.
   
 
 0.561
RSF1
Remodeling and spacing factor 1.
    
 
 0.529
HMGXB3
HMG domain-containing protein 3 isoform X1.
      
 0.470
MFSD8
MFS transporter, ceroid-lipofuscinosis neuronal protein 7.
      
 0.407
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.