STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRD8Bromodomain-containing protein 8 isoform X1. (951 aa)    
Predicted Functional Partners:
DMAP1
DNA methyltransferase 1-associated protein 1.
    
 0.992
MRGBP
MRG/MORF4L-binding protein.
    
 0.990
MEAF6
Smad nuclear-interacting protein 1.
    
 0.988
YEATS4
YEATS domain-containing protein 4.
    
 0.987
RUVBL2
RuvB-like protein 2.
    
 0.984
ING3
Inhibitor of growth protein 3 isoform X1.
    
 0.982
RUVBL1
RuvB-like protein 1 (pontin 52).
    
 0.982
ENSSCAP00000008823
annotation not available
    
 0.977
EP400
E1A binding protein p400.
    
 0.973
ENSSCAP00000016890
annotation not available
    
 0.969
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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