Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103818207Transmembrane protein 17B-like. (244 aa)    
Predicted Functional Partners:
CC2D2A
Coiled-coil and C2 domain containing 2A.
    
 
 0.554
TMEM237
Transmembrane protein 237.
      
 0.528
TMEM231
Transmembrane protein 231 isoform X1.
    
 
 0.528
B9D1
B9 domain-containing protein 1 isoform X2.
    
 
 0.522
NPHP1
Nephrocystin 1.
      
 0.518
TMEM67
Meckelin.
   
  
 0.482
MKS1
Meckel syndrome type 1 protein.
      
 0.476
TTC25
Tetratricopeptide repeat domain 25.
      
 0.459
ENSSCAP00000024041
annotation not available
   
  
 0.451
IFT52
Intraflagellar transport protein 52 homolog isoform X2.
      
 0.445
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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