STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABGGTAGeranylgeranyl transferase type-2 subunit alpha. (307 aa)    
Predicted Functional Partners:
RABGGTB
Geranylgeranyl transferase type-2 subunit beta.
    
 0.999
CHM
Rab proteins geranylgeranyltransferase component A 1.
   
 0.984
GDI2
Rab GDP dissociation inhibitor beta.
    
 0.913
RAB39A
RAB39A, member RAS oncogene family.
    
 0.805
RAB22A
Ras-related protein Rab-22A.
    
 0.783
RAB1A
Ras-related protein Rab-1A.
    
 0.782
RAB31
Ras-related protein Rab-22.
    
 0.775
RAB9B
Ras-related protein Rab-9B isoform X1.
    
 0.764
RAB7B
Ras-related protein Rab-7B.
    
 0.758
RAB24
Ras-related protein Rab-24.
    
 0.739
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.