Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFTPHAftiphilin isoform X1. (879 aa)    
Predicted Functional Partners:
SYNRG
Synergin gamma isoform X1.
   
 0.958
HEATR5A
HEAT repeat-containing protein 5A isoform X5.
   
 
 0.838
CLBA1
Uncharacterized protein CLBA1.
     
0.782
AP4M1
AP-4 complex subunit mu-1.
    
  0.743
AP1M1
AP-1 complex subunit mu-1.
    
  0.743
AP1S2
AP-1 complex subunit sigma-2 isoform X2.
    
 0.682
HEATR5B
HEAT repeat-containing protein 5B.
   
 
 0.665
VAPB
VAMP associated protein B and C.
    
   0.651
AP3D1
AP-3 complex subunit delta-1.
   
 0.636
AP5M1
AP-5 complex subunit mu-1.
    
  0.618
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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