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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIN28BLin-28 homolog B. (250 aa)    
Predicted Functional Partners:
DROSHA
Ribonuclease III.
   
 
 0.643
TUT4
Terminal uridylyltransferase 4 isoform X1.
   
 0.586
DICER1
Endoribonuclease Dicer.
   
 
 0.554
DGCR8
Microprocessor complex subunit DGCR8.
      
 0.540
BEND2
BEN domain-containing protein 2.
      
 0.520
HMGA2
High mobility group AT-hook protein 2.
      
 0.513
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 
 0.490
RPS23
Small subunit ribosomal protein S23e.
   
 
 0.490
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.485
DDX6
Probable ATP-dependent RNA helicase DDX6.
  
 0.482
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.