Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIN28BLin-28 homolog B. (250 aa)    
Predicted Functional Partners:
CDK2AP1
Cyclin-dependent kinase 2-associated protein 1.
      
 0.692
LIN28A
Protein lin-28 homolog A.
   
   0.685
BEND2
BEN domain-containing protein 2.
      
 0.641
TUT4
Terminal uridylyltransferase 4 isoform X1.
    
 0.640
DROSHA
Ribonuclease III.
   
 
 0.637
RPL3
Large subunit ribosomal protein L3e.
   
   0.621
HMGA2
High mobility group AT-hook protein 2.
      
 0.599
ARHGAP15
Rho GTPase-activating protein 15.
      
 0.599
DGCR8
Microprocessor complex subunit DGCR8.
      
 0.590
OTX2
Homeobox protein OTX2 isoform X1.
      
 0.573
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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