STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMC1Transmembrane channel-like protein 1. (806 aa)    
Predicted Functional Partners:
CIB2
Calcium and integrin-binding family member 2.
    
 0.841
LHFPL5
LHFPL tetraspan subfamily member 5 protein isoform X1.
   
 0.808
TMIE
Transmembrane inner ear expressed protein.
   
 
 0.714
CIB1
Calcium and integrin-binding protein 1.
    
 0.690
CIB3
Calcium and integrin-binding family member 3.
    
 0.690
PCDH15
Protocadherin related 15.
    
 0.644
SRRM4
Serine/arginine repetitive matrix 4.
    
 0.633
COCH
Cochlin.
    
 0.629
LOC103816470
Protein fantom.
     
 0.628
C9orf85
Uncharacterized protein C9orf85 homolog.
    
 
 0.616
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.