Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALDH1A1Retinal dehydrogenase 1. (370 aa)    
Predicted Functional Partners:
ALDH1A3
LOW QUALITY PROTEIN: aldehyde dehydrogenase family 1 member A3.
  
 
 
0.969
CYP26A1
Cytochrome P450 family 26 subfamily A.
   
 0.962
RDH10
Retinol dehydrogenase 10.
  
 0.961
CYP26B1
Cytochrome P450 family 26 subfamily B member 1.
   
 0.959
DHRS3
Short-chain dehydrogenase/reductase 3.
  
 0.941
ADH5
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
  
 0.939
ENSSCAP00000019446
Alcohol dehydrogenase 1-like.
  
 0.938
ENSSCAP00000019450
Alcohol dehydrogenase 1-like.
  
 0.935
ENSSCAP00000018025
Retinol dehydrogenase 12-like.
  
 0.932
SDR16C5-2
All-trans-retinol dehydrogenase (NAD+).
  
 0.928
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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