Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HECTD3HECT domain E3 ubiquitin protein ligase 3. (833 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.797
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.790
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X4.
   
 
 0.732
ENSSCAP00000002922
annotation not available
    
 0.710
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X3.
   
   0.667
TRAF3
TNF receptor-associated factor 3 isoform X1.
    
 
 0.614
MARS1
methionyl-tRNA synthetase 1.
    
   0.577
UBB
Ubiquitin B.
    
 0.494
UBC
Polyubiquitin-C.
    
 0.494
POLDIP3
Polymerase delta-interacting protein 3 isoform X1.
    
 
 0.482
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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