STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
URODUroporphyrinogen decarboxylase. (400 aa)    
Predicted Functional Partners:
CPOX
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
  
 0.993
UROS
Uroporphyrinogen-III synthase.
  
 
 0.992
HMBS
Hydroxymethylbilane synthase.
 0.956
FECH
Protoporphyrin/coproporphyrin ferrochelatase.
  
  
 0.917
ALAD
Delta-aminolevulinic acid dehydratase isoform X1.
 
 
 0.809
LOC103820232
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1.
    
  0.779
MOCS1
GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase.
    
  0.758
ALAS1
5-aminolevulinate synthase, nonspecific, mitochondrial.
     
 0.683
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X3.
  
  
 0.653
CDKAL1
Threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1.
  
 
 0.610
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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