Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
URODUroporphyrinogen decarboxylase. (400 aa)    
Predicted Functional Partners:
CPOX
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
  
 0.998
UROS
Uroporphyrinogen-III synthase.
  
 
 0.996
HMBS
Hydroxymethylbilane synthase.
 0.966
ALAD
Delta-aminolevulinic acid dehydratase isoform X1.
 
 
 0.944
FECH
Protoporphyrin/coproporphyrin ferrochelatase.
  
  
 0.935
LRATD2
Protein FAM84B.
    
   0.840
ALAS1
5-aminolevulinate synthase, nonspecific, mitochondrial.
  
  
 0.692
PUM2
Pumilio RNA binding family member 2.
    
 
 0.644
PUM1
Pumilio RNA-binding family.
    
 
 0.644
ENSSCAP00000003106
annotation not available
      
 0.599
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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