STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MEIS1Homeobox protein Meis1 isoform X1. (465 aa)    
Predicted Functional Partners:
TSHZ3
Teashirt homolog 3.
   
 0.814
ENSSCAP00000000588
annotation not available
   
 0.797
PBX1
LOW QUALITY PROTEIN: pre-B-cell leukemia transcription factor 1.
   
0.797
PBX3
Pre-B-cell leukemia transcription factor 3.
   
0.797
ENSSCAP00000022211
annotation not available
   
 0.797
HOXC6
Homeobox C6.
   
 0.721
HOXA9
Homeobox protein Hox-A9.
    
 
 0.666
YAP1
Yes associated protein 1.
    
 0.654
DLX1
Homeobox protein DLX1/4/6.
    
 
 0.597
WWTR1
WW domain-containing transcription regulator protein 1.
    
 0.561
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.