Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VPS39Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39. (874 aa)    
Predicted Functional Partners:
VPS18
Vacuolar protein sorting-associated protein 18 homolog.
   
 0.999
VPS33A
Vacuolar protein sorting-associated protein 33A.
   
 0.999
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS11
Vacuolar protein sorting-associated protein 11 homolog isoform X1.
   
 0.999
VPS41
Vacuolar protein sorting-associated protein 41 homolog isoform X1.
   
 0.998
STX17
Syntaxin 17.
   
 0.979
RAB7A
Ras-related protein Rab-7A.
    
 0.950
VPS33B
Vacuolar protein sorting-associated protein 33B.
   
 0.948
PLEKHM1
Pleckstrin homology domain-containing family M member 1 isoform X1.
   
 
 0.941
RAB7B
Ras-related protein Rab-7B.
    
 0.938
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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