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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRPL5439S ribosomal protein L54, mitochondrial. (187 aa)    
Predicted Functional Partners:
MRPL23
39S ribosomal protein L23, mitochondrial.
   
 
 0.977
MRPL17
39S ribosomal protein L17, mitochondrial.
   
 
 0.963
MRPL41
39S ribosomal protein L41, mitochondrial.
   
 
 0.958
MRPL47
39S ribosomal protein L47, mitochondrial.
   
 
 0.954
MRPL27
39S ribosomal protein L27, mitochondrial.
   
 
 0.951
RPS23
Small subunit ribosomal protein S23e.
   
 
 0.940
MRPS11
28S ribosomal protein S11, mitochondrial.
   
 
 0.937
MRPL43
39S ribosomal protein L43, mitochondrial.
   
 
 0.933
MRPL40
39S ribosomal protein L40, mitochondrial.
   
 
 0.932
MRPS6
28S ribosomal protein S6, mitochondrial.
   
 
 0.929
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.