STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL5439S ribosomal protein L54, mitochondrial. (187 aa)    
Predicted Functional Partners:
MRPL17
39S ribosomal protein L17, mitochondrial.
   
 
 0.951
NDUFAB1
NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein.
   
  0.929
MRPL2
39S ribosomal protein L2, mitochondrial.
   
 
 0.925
MRPL41
39S ribosomal protein L41, mitochondrial.
   
 
 0.917
MRPL47
39S ribosomal protein L47, mitochondrial.
   
 
 0.914
MRPL15
39S ribosomal protein L15, mitochondrial.
   
 
 0.905
MRPL43
39S ribosomal protein L43, mitochondrial.
   
 
 0.903
MRPL27
39S ribosomal protein L27, mitochondrial.
   
 
 0.902
MRPL16
39S ribosomal protein L16, mitochondrial.
   
 
 0.891
MRPL13
39S ribosomal protein L13, mitochondrial.
   
 
 0.884
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.