STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC47LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 47. (536 aa)    
Predicted Functional Partners:
FARS2
LOW QUALITY PROTEIN: phenylalanine--tRNA ligase, mitochondrial.
  
 0.945
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X3.
  
 
 0.923
YARS1
Tyrosine--tRNA ligase, cytoplasmic.
  
  
 0.856
IARS1
Isoleucine--tRNA ligase, cytoplasmic isoform X1.
  
 
 0.802
IARS2
Isoleucine--tRNA ligase, mitochondrial.
  
 
 0.664
LARS2
Probable leucine--tRNA ligase, mitochondrial.
  
  
 0.621
MARS1
methionyl-tRNA synthetase 1.
  
  
 0.599
LARS1
Leucine--tRNA ligase, cytoplasmic.
  
  
 0.594
WARS1
Tryptophan--tRNA ligase, cytoplasmic.
  
  
 0.579
EIF2S3
Eukaryotic translation initiation factor 2 subunit 3.
  
  
 0.563
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.