STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR83WD repeat domain 83. (237 aa)    
Predicted Functional Partners:
LAMTOR3
Ragulator complex protein LAMTOR3.
   
 0.950
SF3B4
LOW QUALITY PROTEIN: splicing factor 3B subunit 4.
    
 
 0.941
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
   0.912
GPATCH1
G patch domain-containing protein 1 isoform X1.
    
 
 0.864
CCDC12
Coiled-coil domain-containing protein 12.
    
 
 0.627
RAF1
RAF proto-oncogene serine/threonine-protein kinase isoform X1.
    
 0.616
BRAF
B-Raf proto-oncogene serine/threonine-protein kinase.
    
 0.612
MAP2K1
Dual specificity mitogen-activated protein kinase kinase 1.
    
 0.551
ENSSCAP00000016599
annotation not available
    
 0.551
CWF19L2
CWF19-like protein 2.
   
 
 0.548
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.