STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFFBDNA fragmentation factor, 40 kD, beta subunit. (298 aa)    
Predicted Functional Partners:
CASP3
Caspase-3 isoform X1.
    
 0.732
H1-0
Histone H1/5.
    
 0.650
CFLAR
CASP8 and FADD-like apoptosis regulator.
    
 0.498
CASP6
Caspase-6 isoform X2.
    
 0.492
CENPU
Centromere protein U isoform X1.
    
 0.489
CASP7
Caspase 7.
    
 0.489
CASP9
LOW QUALITY PROTEIN: caspase-9.
    
 0.436
CASP2
Caspase 2.
    
 0.419
HP1BP3
Heterochromatin protein 1-binding protein 3.
    
 0.403
ENSSCAP00000022561
Protein B4.
    
 0.403
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.