STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SH3TC2SH3 domain and tetratricopeptide repeats 2. (758 aa)    
Predicted Functional Partners:
FIG4
Phosphatidylinositol 3,5-bisphosphate 5-phosphatase.
      
 0.683
LITAF
Lipopolysaccharide-induced tumor necrosis factor-alpha factor.
   
  
 0.683
GDAP1
Ganglioside-induced differentiation-associated protein 1.
      
 0.680
FGD4
FYVE, RhoGEF and PH domain-containing protein 4 isoform X3.
      
 0.630
AP5S1
AP-5 complex subunit sigma-1.
      
 0.542
IGHMBP2
ATP-dependent RNA/DNA helicase IGHMBP2.
      
 0.536
SH3TC1
SH3 domain and tetratricopeptide repeat-containing protein 1.
      
0.526
LRSAM1
E3 ubiquitin-protein ligase LRSAM1 isoform X1.
      
 0.485
SBF1
SET binding factor 1.
      
 0.480
SBF2
SET binding factor 2.
      
 0.480
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.