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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCL1RNA 3'-terminal phosphate cyclase-like protein. (351 aa)    
Predicted Functional Partners:
BYSL
Bystin like.
   
 0.999
BMS1
Ribosome biogenesis protein BMS1 homolog.
   
 0.999
PWP2
Periodic tryptophan protein 2 homolog.
   
 0.999
NOP14
Nucleolar protein 14.
   
 0.999
RRP9
U3 small nucleolar RNA-interacting protein 2.
   
 0.999
HEATR1
U3 small nucleolar RNA-associated protein 10.
   
 0.998
IMP4
U3 small nucleolar ribonucleoprotein protein IMP4.
   
 0.998
NOC4L
U3 small nucleolar RNA-associated protein 19.
   
 0.998
UTP20
Small subunit processome component 20 homolog.
   
 0.998
UTP4
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.998
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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