Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCL1RNA 3'-terminal phosphate cyclase-like protein. (351 aa)    
Predicted Functional Partners:
BMS1
Ribosome biogenesis protein BMS1 homolog.
   
 0.999
WDR43
WD repeat domain 43.
   
 0.991
PWP2
Periodic tryptophan protein 2 homolog.
   
 
 0.989
IMP4
U3 small nucleolar ribonucleoprotein protein IMP4.
   
 
 0.986
UTP18
U3 small nucleolar RNA-associated protein 18 homolog.
   
 0.977
NOC4L
U3 small nucleolar RNA-associated protein 19.
   
 
 0.975
BYSL
Bystin like.
   
 
 0.974
UTP4
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.971
RRP7A
Ribosomal RNA processing 7 homolog A.
   
 0.959
WDR3
U3 small nucleolar RNA-associated protein 12.
   
 
 0.959
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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