STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF182E3 ubiquitin-protein ligase RNF182. (245 aa)    
Predicted Functional Partners:
RNF186
E3 ubiquitin-protein ligase RNF186.
      
 0.682
RNF150
RING finger protein 150.
    
 0.650
TECTB
Beta-tectorin.
      
 0.608
TBC1D30
TBC1 domain family member 30 isoform X2.
      
 0.584
GID4
Glucose-induced degradation protein 4 homolog.
    
 
 0.565
OCIAD2
OCIA domain-containing protein 2.
      
 0.529
RNF13
E3 ubiquitin-protein ligase RNF13.
      
 0.528
LHFPL2
LHFPL tetraspan subfamily member 2 protein.
      
 0.510
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.508
ENSSCAP00000000474
annotation not available
    
  0.504
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.