Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTN4RReticulon 4 receptor. (223 aa)    
Predicted Functional Partners:
NGFR
Nerve growth factor receptor.
    
 0.841
LINGO1
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein.
   
 
 0.799
RTN4
Reticulon-4 isoform X3.
    
 0.686
OMG
Oligodendrocyte myelin glycoprotein.
    
 
 0.533
ZDHHC8
Probable palmitoyltransferase ZDHHC8 isoform X1.
      
 0.532
ANPEP
Aminopeptidase Ey.
    
 0.529
LINGO2
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2.
   
 
 0.528
RTN1
LOW QUALITY PROTEIN: reticulon-1.
    
 0.514
BAIAP2
BAR/IMD domain containing adaptor protein 2.
     
 0.509
RAPGEF1
Rap guanine nucleotide exchange factor 1 isoform X1.
    
 0.482
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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