Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VPS13AVacuolar protein sorting-associated protein 13A isoform X1. (2974 aa)    
Predicted Functional Partners:
ADCY8
Adenylate cyclase 8.
   
 
 0.716
VPS35
Vacuolar protein sorting-associated protein 35.
   
 
 0.644
SYNJ1
Synaptojanin-1 isoform X1.
   
 
 0.563
ADCYAP1
Pituitary adenylate cyclase-activating polypeptide.
      
 0.563
ENSSCAP00000008004
annotation not available
    
   0.541
CHRNA5
Neuronal acetylcholine receptor subunit alpha-5 isoform X1.
      
 0.528
CLVS2
Clavesin-2.
    
 
 0.518
PSD3
PH and SEC7 domain-containing protein 3 isoform X2.
      
 0.517
PIGG
Ethanolamine phosphate transferase 2 subunit G.
      
 0.515
SPG11
Spatacsin.
   
  
 0.508
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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