STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13AVacuolar protein sorting-associated protein 13A isoform X1. (2974 aa)    
Predicted Functional Partners:
SLC6A15
Solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20.
   
  
 0.694
PTPRD
Receptor-type tyrosine-protein phosphatase delta isoform X2.
    
 
 0.591
GAK
Cyclin-G-associated kinase isoform X1.
    
 
 0.580
ENSSCAP00000012247
Neurexin-3-beta isoform X1.
      
 0.543
DNAJC6
LOW QUALITY PROTEIN: putative tyrosine-protein phosphatase auxilin.
    
 
 0.537
VPS35
Vacuolar protein sorting-associated protein 35.
   
 
 0.462
CDH18
Cadherin-18 isoform X2.
   
  
 0.405
HTR7
5-hydroxytryptamine receptor 7.
      
 0.404
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.