STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP45Ubiquitin carboxyl-terminal hydrolase 45 isoform X2. (846 aa)    
Predicted Functional Partners:
MYSM1
Histone H2A deubiquitinase MYSM1.
   
  
 0.640
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.553
OTUD6B
OTU domain-containing protein 6.
   
  
 0.518
KLHL7
Nucleoporin-like protein 2.
      
 0.512
USP39
Ubiquitin specific peptidase 39.
      
 0.469
UBB
Ubiquitin B.
    
  0.453
UBC
Polyubiquitin-C.
    
  0.453
CLSPN
Claspin.
      
 0.450
TOPORS
E3 ubiquitin-protein ligase Topors isoform X2.
   
  
 0.429
PNISR
Splicing factor, arginine/serine-rich 18.
 
 
  
 0.427
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.