TOE1 protein (Serinus canaria) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TOE1

Target of EGR1 protein 1. (498 aa)

Predicted Functional Partners:

SNUPN

0.933

GEMIN8

0.873

SNRPA1

0.837

PRCC

0.797

SF3B3

0.708

ENSSCAP00000014343

0.704

MUTYH

0.692

LSM4

0.673

AGGF1

0.664

ENSSCAP00000012048

0.664

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGGF1	TOE1	ENSSCAP00000006462	ENSSCAP00000001451	Angiogenic factor with G patch and FHA domains 1 isoform X1.	Target of EGR1 protein 1.	0.664
ENSSCAP00000012048	LSM4	ENSSCAP00000012048	ENSSCAP00000021872	annotation not available	U6 snRNA-associated Sm-like protein LSm4.	0.773
ENSSCAP00000012048	SF3B3	ENSSCAP00000012048	ENSSCAP00000007079	annotation not available	Splicing factor 3B subunit 3.	0.656
ENSSCAP00000012048	SNRPA1	ENSSCAP00000012048	ENSSCAP00000012840	annotation not available	U2 small nuclear ribonucleoprotein A.	0.676
ENSSCAP00000012048	TOE1	ENSSCAP00000012048	ENSSCAP00000001451	annotation not available	Target of EGR1 protein 1.	0.664
ENSSCAP00000014343	GEMIN8	ENSSCAP00000014343	ENSSCAP00000018623	annotation not available	Gem-associated protein 8 isoform X1.	0.995
ENSSCAP00000014343	SNUPN	ENSSCAP00000014343	ENSSCAP00000017684	annotation not available	Snurportin-1.	0.659
ENSSCAP00000014343	TOE1	ENSSCAP00000014343	ENSSCAP00000001451	annotation not available	Target of EGR1 protein 1.	0.704
GEMIN8	ENSSCAP00000014343	ENSSCAP00000018623	ENSSCAP00000014343	Gem-associated protein 8 isoform X1.	annotation not available	0.995
GEMIN8	SNUPN	ENSSCAP00000018623	ENSSCAP00000017684	Gem-associated protein 8 isoform X1.	Snurportin-1.	0.554
GEMIN8	TOE1	ENSSCAP00000018623	ENSSCAP00000001451	Gem-associated protein 8 isoform X1.	Target of EGR1 protein 1.	0.873
LSM4	ENSSCAP00000012048	ENSSCAP00000021872	ENSSCAP00000012048	U6 snRNA-associated Sm-like protein LSm4.	annotation not available	0.773
LSM4	SF3B3	ENSSCAP00000021872	ENSSCAP00000007079	U6 snRNA-associated Sm-like protein LSm4.	Splicing factor 3B subunit 3.	0.754
LSM4	SNRPA1	ENSSCAP00000021872	ENSSCAP00000012840	U6 snRNA-associated Sm-like protein LSm4.	U2 small nuclear ribonucleoprotein A.	0.945
LSM4	TOE1	ENSSCAP00000021872	ENSSCAP00000001451	U6 snRNA-associated Sm-like protein LSm4.	Target of EGR1 protein 1.	0.673
MUTYH	TOE1	ENSSCAP00000001419	ENSSCAP00000001451	Adenine DNA glycosylase isoform X1.	Target of EGR1 protein 1.	0.692
PRCC	TOE1	ENSSCAP00000002585	ENSSCAP00000001451	Proline-rich protein PRCC.	Target of EGR1 protein 1.	0.797
SF3B3	ENSSCAP00000012048	ENSSCAP00000007079	ENSSCAP00000012048	Splicing factor 3B subunit 3.	annotation not available	0.656
SF3B3	LSM4	ENSSCAP00000007079	ENSSCAP00000021872	Splicing factor 3B subunit 3.	U6 snRNA-associated Sm-like protein LSm4.	0.754
SF3B3	SNRPA1	ENSSCAP00000007079	ENSSCAP00000012840	Splicing factor 3B subunit 3.	U2 small nuclear ribonucleoprotein A.	0.990