Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
TRIP12E3 ubiquitin-protein ligase TRIP12 isoform X4. (2061 aa)    
Predicted Functional Partners:
UBR2
E3 ubiquitin-protein ligase UBR2 isoform X1.
   
 0.975
UBR1
E3 ubiquitin-protein ligase UBR1 isoform X1.
   
 0.975
USP7
Ubiquitin carboxyl-terminal hydrolase 7 isoform X2.
   
 
 0.963
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.963
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
   
  0.957
UBE2K
Ubiquitin-conjugating enzyme (huntingtin interacting protein 2).
   
 0.919
UBE2D1
Ubiquitin-conjugating enzyme E2 D1 isoform X1.
   
 0.917
UBE2T
Ubiquitin-conjugating enzyme E2 T isoform X2.
   
 0.917
UBE2D2
Ubiquitin-conjugating enzyme E2 D2.
   
 0.917
UBE2D3
Ubiquitin-conjugating enzyme E2 D3 isoform X1.
   
 0.917
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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