Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PES1Pescadillo ribosomal biogenesis factor 1. (569 aa)    
Predicted Functional Partners:
WDR12
Ribosome biogenesis protein WDR12.
   
 0.999
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.998
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 0.997
GNL3
G protein nucleolar 3.
   
 0.996
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.994
GTPBP4
Nucleolar GTP-binding protein 1.
   
 
 0.989
SDAD1
Protein SDA1 homolog.
   
 
 0.987
WDR18
Pre-rRNA-processing protein IPI3.
   
 0.987
DDX27
Probable ATP-dependent RNA helicase DDX27 isoform X1.
   
 0.987
GNL2
Nucleolar GTP-binding protein 2.
   
 0.987
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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