Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFMBT1Scm-like with four MBT domains protein 1. (867 aa)    
Predicted Functional Partners:
SFMBT2
Scm like with four mbt domains 2.
  
 
 
0.904
RCOR1
REST corepressor 1.
   
 0.847
HMG20A
High mobility group protein 20A isoform X3.
    
 
 0.842
RYBP
RING1 and YY1-binding protein.
    
 0.742
YAF2
YY1-associated factor 2.
    
 0.742
KDM1A
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
    
 0.667
ENSSCAP00000022596
annotation not available
      
 0.606
GLT8D1
Glycosyltransferase 8 domain-containing protein 1.
      
 0.600
C12orf65
Probable peptide chain release factor C12orf65 homolog, mitochondrial.
      
 0.569
ZHX2
Zinc fingers and homeoboxes protein 2.
      
 0.558
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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