STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDM4C[histone H3]-trimethyl-L-lysine9/36 demethylase. (257 aa)    
Predicted Functional Partners:
ENSSCAP00000003763
annotation not available
 
      0.895
KDM1A
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.539
PRUNE2
Protein prune homolog 2 isoform X1.
      
 0.521
KIF24
Kinesin family member 2/24.
      
 0.521
KDM6A
Lysine-specific demethylase 6A isoform X3.
   
 0.454
ATM
Serine-protein kinase ATM isoform X1.
     
 0.429
ESR1
LOW QUALITY PROTEIN: estrogen receptor.
    
 0.416
TP53BP1
Tumor suppressor p53-binding protein 1.
     
 0.413
ENSSCAP00000000286
annotation not available
    
 0.412
ENSSCAP00000002395
annotation not available
    
 0.412
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.