Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMG20BHigh mobility group 20B. (329 aa)    
Predicted Functional Partners:
PHF21A
PHD finger protein 21A isoform X1.
    
 0.997
RCOR1
REST corepressor 1.
   
 0.996
KDM1A
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.996
GSE1
Genetic suppressor element 1 isoform X5.
   
 0.961
HMG20A
High mobility group protein 20A isoform X3.
    
 
 0.958
RCOR3
REST corepressor 3 isoform X1.
   
 0.953
BRCA2
Breast cancer type 2 susceptibility protein isoform X1.
    
 
 0.916
SF3A2
Splicing factor 3a subunit 2.
   
   0.855
SNAI2
Zinc finger protein SNAI2.
    
   0.829
HDAC1
Histone deacetylase 1/2.
   
 0.700
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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