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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMG20BHigh mobility group 20B. (329 aa)    
Predicted Functional Partners:
KDM1A
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.949
PHF21A
PHD finger protein 21A isoform X1.
    
 0.940
RCOR1
REST corepressor 1.
   
 0.938
RCOR3
REST corepressor 3 isoform X1.
   
 0.869
GSE1
Genetic suppressor element 1 isoform X5.
   
 0.790
HMG20A
High mobility group protein 20A isoform X3.
  
 
 
0.735
ZNF217
Zinc finger protein 217.
    
 0.662
SAP18
Histone deacetylase complex subunit SAP18.
   
 
 0.616
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
   
 0.608
ACTR8
Actin-related protein 8.
    
 0.595
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.