EHD4 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EHD4

LOW QUALITY PROTEIN: EH domain-containing protein 4. (474 aa)

Predicted Functional Partners:

RBSN

0.888

SNAP29

0.749

VPS45

0.636

ANKFY1

0.632

MICALL1

0.630

ARID5B

0.599

RAB5C

0.581

RAB17

0.581

RAB5A

0.581

PACSIN2

0.562

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKFY1	EHD4	ENSSCAP00000006004	ENSSCAP00000001502	Rabankyrin-5 isoform X1.	LOW QUALITY PROTEIN: EH domain-containing protein 4.	0.632
ANKFY1	RAB17	ENSSCAP00000006004	ENSSCAP00000011797	Rabankyrin-5 isoform X1.	Ras-related protein Rab-17.	0.701
ANKFY1	RAB5A	ENSSCAP00000006004	ENSSCAP00000021112	Rabankyrin-5 isoform X1.	Ras-related protein Rab-5A.	0.701
ANKFY1	RAB5C	ENSSCAP00000006004	ENSSCAP00000009158	Rabankyrin-5 isoform X1.	Ras-related protein Rab-5C.	0.701
ANKFY1	RBSN	ENSSCAP00000006004	ENSSCAP00000022635	Rabankyrin-5 isoform X1.	LOW QUALITY PROTEIN: rabenosyn-5.	0.644
ARID5B	EHD4	ENSSCAP00000004698	ENSSCAP00000001502	AT-rich interactive domain-containing protein 5B.	LOW QUALITY PROTEIN: EH domain-containing protein 4.	0.599
EHD4	ANKFY1	ENSSCAP00000001502	ENSSCAP00000006004	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Rabankyrin-5 isoform X1.	0.632
EHD4	ARID5B	ENSSCAP00000001502	ENSSCAP00000004698	LOW QUALITY PROTEIN: EH domain-containing protein 4.	AT-rich interactive domain-containing protein 5B.	0.599
EHD4	MICALL1	ENSSCAP00000001502	ENSSCAP00000005364	LOW QUALITY PROTEIN: EH domain-containing protein 4.	MICAL-like protein 1 isoform X1.	0.630
EHD4	PACSIN2	ENSSCAP00000001502	ENSSCAP00000011586	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Protein kinase C and casein kinase substrate in neurons protein 2 isoform X1.	0.562
EHD4	RAB17	ENSSCAP00000001502	ENSSCAP00000011797	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Ras-related protein Rab-17.	0.581
EHD4	RAB5A	ENSSCAP00000001502	ENSSCAP00000021112	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Ras-related protein Rab-5A.	0.581
EHD4	RAB5C	ENSSCAP00000001502	ENSSCAP00000009158	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Ras-related protein Rab-5C.	0.581
EHD4	RBSN	ENSSCAP00000001502	ENSSCAP00000022635	LOW QUALITY PROTEIN: EH domain-containing protein 4.	LOW QUALITY PROTEIN: rabenosyn-5.	0.888
EHD4	SNAP29	ENSSCAP00000001502	ENSSCAP00000005792	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Synaptosomal-associated protein 29.	0.749
EHD4	VPS45	ENSSCAP00000001502	ENSSCAP00000016275	LOW QUALITY PROTEIN: EH domain-containing protein 4.	Vacuolar protein sorting-associated protein 45.	0.636
MICALL1	EHD4	ENSSCAP00000005364	ENSSCAP00000001502	MICAL-like protein 1 isoform X1.	LOW QUALITY PROTEIN: EH domain-containing protein 4.	0.630
MICALL1	PACSIN2	ENSSCAP00000005364	ENSSCAP00000011586	MICAL-like protein 1 isoform X1.	Protein kinase C and casein kinase substrate in neurons protein 2 isoform X1.	0.502
PACSIN2	EHD4	ENSSCAP00000011586	ENSSCAP00000001502	Protein kinase C and casein kinase substrate in neurons protein 2 isoform X1.	LOW QUALITY PROTEIN: EH domain-containing protein 4.	0.562
PACSIN2	MICALL1	ENSSCAP00000011586	ENSSCAP00000005364	Protein kinase C and casein kinase substrate in neurons protein 2 isoform X1.	MICAL-like protein 1 isoform X1.	0.502