SLC45A2 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC45A2

Membrane-associated transporter protein isoform X2. (546 aa)

Predicted Functional Partners:

TYRP1

0.826

SLC24A5

0.708

OCA2

0.664

TYR

0.586

GPR143

0.569

MITF

0.506

PSMB2

0.470

GCHFR

0.462

SLC2A11

0.458

BCO2

0.450

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCO2	GPR143	ENSSCAP00000010125	ENSSCAP00000018199	Beta,beta-carotene 9',10'-oxygenase isoform X1.	G-protein coupled receptor 143.	0.440
BCO2	MITF	ENSSCAP00000010125	ENSSCAP00000010568	Beta,beta-carotene 9',10'-oxygenase isoform X1.	Melanocyte inducing transcription factor.	0.801
BCO2	OCA2	ENSSCAP00000010125	ENSSCAP00000023233	Beta,beta-carotene 9',10'-oxygenase isoform X1.	P protein.	0.402
BCO2	SLC2A11	ENSSCAP00000010125	ENSSCAP00000004233	Beta,beta-carotene 9',10'-oxygenase isoform X1.	MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 11.	0.427
BCO2	SLC45A2	ENSSCAP00000010125	ENSSCAP00000001534	Beta,beta-carotene 9',10'-oxygenase isoform X1.	Membrane-associated transporter protein isoform X2.	0.450
BCO2	TYRP1	ENSSCAP00000010125	ENSSCAP00000002233	Beta,beta-carotene 9',10'-oxygenase isoform X1.	LOW QUALITY PROTEIN: 5,6-dihydroxyindole-2-carboxylic acid oxidase.	0.410
GCHFR	GPR143	ENSSCAP00000010820	ENSSCAP00000018199	GTP cyclohydrolase 1 feedback regulatory protein.	G-protein coupled receptor 143.	0.529
GCHFR	MITF	ENSSCAP00000010820	ENSSCAP00000010568	GTP cyclohydrolase 1 feedback regulatory protein.	Melanocyte inducing transcription factor.	0.443
GCHFR	OCA2	ENSSCAP00000010820	ENSSCAP00000023233	GTP cyclohydrolase 1 feedback regulatory protein.	P protein.	0.476
GCHFR	SLC2A11	ENSSCAP00000010820	ENSSCAP00000004233	GTP cyclohydrolase 1 feedback regulatory protein.	MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 11.	0.426
GCHFR	SLC45A2	ENSSCAP00000010820	ENSSCAP00000001534	GTP cyclohydrolase 1 feedback regulatory protein.	Membrane-associated transporter protein isoform X2.	0.462
GCHFR	TYR	ENSSCAP00000010820	ENSSCAP00000003809	GTP cyclohydrolase 1 feedback regulatory protein.	Tyrosinase.	0.420
GCHFR	TYRP1	ENSSCAP00000010820	ENSSCAP00000002233	GTP cyclohydrolase 1 feedback regulatory protein.	LOW QUALITY PROTEIN: 5,6-dihydroxyindole-2-carboxylic acid oxidase.	0.617
GPR143	BCO2	ENSSCAP00000018199	ENSSCAP00000010125	G-protein coupled receptor 143.	Beta,beta-carotene 9',10'-oxygenase isoform X1.	0.440
GPR143	GCHFR	ENSSCAP00000018199	ENSSCAP00000010820	G-protein coupled receptor 143.	GTP cyclohydrolase 1 feedback regulatory protein.	0.529
GPR143	MITF	ENSSCAP00000018199	ENSSCAP00000010568	G-protein coupled receptor 143.	Melanocyte inducing transcription factor.	0.489
GPR143	OCA2	ENSSCAP00000018199	ENSSCAP00000023233	G-protein coupled receptor 143.	P protein.	0.715
GPR143	SLC2A11	ENSSCAP00000018199	ENSSCAP00000004233	G-protein coupled receptor 143.	MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 11.	0.424
GPR143	SLC45A2	ENSSCAP00000018199	ENSSCAP00000001534	G-protein coupled receptor 143.	Membrane-associated transporter protein isoform X2.	0.569
GPR143	TYR	ENSSCAP00000018199	ENSSCAP00000003809	G-protein coupled receptor 143.	Tyrosinase.	0.525