STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PID1PTB-containing, cubilin and LRP1-interacting protein isoform X1. (203 aa)    
Predicted Functional Partners:
RUSC1
RUN and SH3 domain-containing protein 1.
      
 0.588
MED13
Mediator of RNA polymerase II transcription subunit 13.
      
 0.534
SDHAF2
Succinate dehydrogenase assembly factor 2, mitochondrial isoform X1.
      
 0.529
PCOLCE2
Procollagen C-endopeptidase enhancer 2 isoform X1.
    
 
 0.489
LRP6
Low-density lipoprotein receptor-related protein 6 isoform X1.
    
 
 0.448
KLHL31
Kelch-like protein 31.
      
 0.427
CPEB1
Cytoplasmic polyadenylation element-binding protein 1 isoform X1.
      
 0.423
PSMD10
26S proteasome non-ATPase regulatory subunit 10.
      
 0.422
KDELR3
ER lumen protein-retaining receptor 3.
      
 0.408
KDELR2
ER lumen protein-retaining receptor 2.
      
 0.408
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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