STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPBP1L1Vasculin-like protein 1. (471 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1 isoform X1.
   
   0.842
CNOT11
CCR4-NOT transcription complex subunit 11.
    
   0.720
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 
 0.704
EIF3E
Eukaryotic translation initiation factor 3 subunit E.
   
   0.656
CNOT7
CCR4-NOT transcription complex subunit 7/8.
   
 
 0.649
LRRK1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
   0.546
EDRF1
Erythroid differentiation-related factor 1.
      
 0.527
EIF3A
Eukaryotic translation initiation factor 3 subunit A isoform X1.
    
   0.514
CNOT6L
CCR4-NOT transcription complex subunit 6-like.
    
   0.497
CNOT6
CCR4-NOT transcription complex subunit 6 isoform X1.
    
   0.497
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.