STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000001602annotation not available (248 aa)    
Predicted Functional Partners:
CERKL
Ceramide kinase-like protein.
 
      0.899
EIF3G
DNA (cytosine-5)-methyltransferase 1.
    
   0.720
EIF3B
Eukaryotic translation initiation factor 3 subunit B.
    
 
 0.655
EIF3I
LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit I.
    
   0.575
RXYLT1
Ribitol-5-phosphate xylosyltransferase 1 isoform X2.
      
 0.567
NADK
NAD kinase isoform X1.
     
 0.563
FAM161A
FAM161 centrosomal protein A.
    
 0.536
DYNC2H1
Cytoplasmic dynein 2 heavy chain 1.
      
 0.528
KLHL7
Nucleoporin-like protein 2.
      
 0.528
RPGR
X-linked retinitis pigmentosa GTPase regulator.
      
 0.471
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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