STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD1Neurogenic differentiation factor 1 isoform X2. (144 aa)    
Predicted Functional Partners:
NEUROD2
Neuronal differentiation 2.
 
      0.731
PAX6
Paired box protein Pax-6 isoform X1.
   
 
 0.652
DLX2
Distal-less homeobox 2.
   
  
 0.587
MYT1L
Myelin transcription factor 1-like protein isoform X1.
   
  
 0.535
GSX2
GS homeobox 2.
   
  
 0.510
GSX1
Homeobox protein GSH.
   
  
 0.500
FOXG1
Forkhead box G1.
   
  
 0.468
ONECUT1
One cut domain, family member 1 (hepatocyte nuclear factor 6).
  
 
 0.413
TCF12
Transcription factor 12 isoform X1.
    
 
 0.408
TCF3
Transcription factor 3.
    
 
 0.408
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.