Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD1Neurogenic differentiation factor 1 isoform X2. (144 aa)    
Predicted Functional Partners:
PAX6
Paired box protein Pax-6 isoform X1.
   
 0.759
NEUROD2
Neuronal differentiation 2.
 
      0.731
DLX2
Distal-less homeobox 2.
   
  
 0.682
ONECUT1
One cut domain, family member 1 (hepatocyte nuclear factor 6).
  
 0.614
TCF12
Transcription factor 12 isoform X1.
    
 
 0.607
TCF3
Transcription factor 3.
    
 
 0.607
NKX6-2
Homeobox protein Nkx-6.2.
   
  
 0.601
NES
Nestin.
      
 0.591
GSX1
Homeobox protein GSH.
   
 0.557
RFX6
DNA-binding protein RFX6.
   
  
 0.550
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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