Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TSEN54TRNA-splicing endonuclease subunit Sen54 isoform X1. (512 aa)    
Predicted Functional Partners:
TSEN2
TRNA-splicing endonuclease subunit Sen2.
    
 0.997
TSEN15
TRNA-splicing endonuclease subunit Sen15.
    
 0.995
CLP1
Polyribonucleotide 5'-hydroxyl-kinase Clp1.
    
 0.985
RARS2
Probable arginine--tRNA ligase, mitochondrial.
      
 0.704
EXOSC3
Exosome component 3.
   
  
 0.617
ARFGAP2
ADP ribosylation factor GTPase activating protein 2.
      
 0.614
ARFGAP3
ADP-ribosylation factor GTPase-activating protein 3 isoform X1.
      
 0.614
ENSSCAP00000002553
annotation not available
     
 0.591
MRPL44
LOW QUALITY PROTEIN: 39S ribosomal protein L44, mitochondrial.
   
 
  0.585
DROSHA
Ribonuclease III.
   
 
  0.585
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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