Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAPN7Calpain-7 isoform X1. (703 aa)    
Predicted Functional Partners:
IST1
Vacuolar protein sorting-associated protein IST1.
    
 
 0.884
CAST
Calpastatin.
   
 0.675
OXNAD1
Oxidoreductase NAD binding domain containing 1.
   
  
 0.615
CAPNS2
Calpain, small subunit 1.
   
 0.551
MITD1
Microtubule interacting and trafficking domain containing 1.
   
  
 0.544
LOC103819904
Golgi apparatus membrane protein TVP23 homolog B-like isoform X2.
      
 0.529
KATNA1
Katanin p60 ATPase-containing subunit A1.
   
  
 0.529
MMP23B
Matrix metalloproteinase-23 isoform X3.
      
 0.528
TOPAZ1
Testis and ovary specific PAZ domain containing 1.
      
 0.527
CHMP6
Charged multivesicular body protein 6.
      
 0.526
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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