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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103825338E3 ubiquitin-protein ligase TRIM69-like. (153 aa)    
Predicted Functional Partners:
GYG1
Glycogenin 1.
    
 0.565
GYG2
Glycogenin-2.
    
 0.565
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.473
CLIC6
Chloride intracellular channel protein 6.
  
     0.457
LOC103814481
Inducible T-cell costimulator-like.
   
 0.432
ENSSCAP00000002929
annotation not available
  
     0.415
UBB
Ubiquitin B.
   
 0.402
UBC
Polyubiquitin-C.
   
 0.402
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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