STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103824337ATP-dependent RNA helicase DDX19/DBP5. (549 aa)    
Predicted Functional Partners:
NUP214
Nucleoporin 214.
    
 
 0.875
NUP88
Nuclear pore complex protein Nup88.
    
 
 0.837
DDX25
ATP-dependent RNA helicase DDX25.
    
   0.826
XPO1
Exportin-1.
    
 
 0.701
ENSSCAP00000006725
annotation not available
    
   0.679
CTIF
CBP80/20-dependent translation initiation factor.
    
   0.679
ENSSCAP00000001829
annotation not available
    
 
 0.672
GLE1
Nucleoporin GLE1.
    
 
 0.672
MIF4GD
MIF4G domain-containing protein.
    
   0.646
ENSSCAP00000010748
annotation not available
    
 
 0.638
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.