STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB2LIM domain-binding protein 2 isoform X1. (349 aa)    
Predicted Functional Partners:
LMO2
Rhombotin-2 isoform X1.
    
 0.927
ISL1
LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-1.
    
 0.891
LMO1
Rhombotin-1.
    
 0.829
LMO3
LIM domain only protein 3 isoform X1.
    
 0.829
LMO4
LIM domain only 4.
   
 0.811
SSBP3
Single stranded DNA binding protein 3.
   
 
 0.773
SSBP2
Single-stranded DNA-binding protein 2 isoform X1.
   
 
 0.773
GATA2
Endothelial transcription factor GATA-2.
    
 0.755
GATA3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.742
LHX9
LIM/homeobox protein Lhx9 isoform X2.
    
 0.721
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.