STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DENND4CDENN domain-containing protein 4C. (1949 aa)    
Predicted Functional Partners:
DENND5A
DENN domain-containing protein 5A.
    
0.695
ANKFY1
Rabankyrin-5 isoform X1.
     
 0.625
MINDY2
LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase MINDY-2.
      
 0.610
YWHAB
14-3-3 protein beta/theta/zeta.
    
   0.577
MADD
MAP kinase activating death domain.
    
   0.575
YWHAZ
14-3-3 protein beta/theta/zeta.
    
   0.558
CHM
Rab proteins geranylgeranyltransferase component A 1.
     
 0.554
DENND6A
Protein DENND6A.
      
 0.553
DENND5B
DENN domain-containing protein 5B isoform X1.
    
 
 0.544
CTU2
Cytoplasmic tRNA 2-thiolation protein 2 isoform X1.
    
 
 0.531
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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