CSRNP2 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CSRNP2

Cysteine and serine rich nuclear protein 2. (550 aa)

Predicted Functional Partners:

ZBTB39

0.752

PPP1CB

0.726

PPP1CC

0.679

PPP1CA

0.679

ENSSCAP00000005536

0.471

IL20RA

0.443

MRPL30

0.433

GPD2

0.431

CCDC65

0.408

NFYA

0.407

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC65	CSRNP2	ENSSCAP00000019217	ENSSCAP00000001796	Dynein regulatory complex subunit 2.	Cysteine and serine rich nuclear protein 2.	0.408
CSRNP2	CCDC65	ENSSCAP00000001796	ENSSCAP00000019217	Cysteine and serine rich nuclear protein 2.	Dynein regulatory complex subunit 2.	0.408
CSRNP2	ENSSCAP00000005536	ENSSCAP00000001796	ENSSCAP00000005536	Cysteine and serine rich nuclear protein 2.	annotation not available	0.471
CSRNP2	GPD2	ENSSCAP00000001796	ENSSCAP00000006135	Cysteine and serine rich nuclear protein 2.	Glycerol-3-phosphate dehydrogenase, mitochondrial isoform X2.	0.431
CSRNP2	IL20RA	ENSSCAP00000001796	ENSSCAP00000003701	Cysteine and serine rich nuclear protein 2.	Interleukin-20 receptor subunit alpha isoform X2.	0.443
CSRNP2	MRPL30	ENSSCAP00000001796	ENSSCAP00000023414	Cysteine and serine rich nuclear protein 2.	39S ribosomal protein L30, mitochondrial isoform X1.	0.433
CSRNP2	NFYA	ENSSCAP00000001796	ENSSCAP00000023598	Cysteine and serine rich nuclear protein 2.	Nuclear transcription factor Y subunit alpha isoform X1.	0.407
CSRNP2	PPP1CA	ENSSCAP00000001796	ENSSCAP00000012820	Cysteine and serine rich nuclear protein 2.	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit.	0.679
CSRNP2	PPP1CB	ENSSCAP00000001796	ENSSCAP00000014457	Cysteine and serine rich nuclear protein 2.	Serine/threonine-protein phosphatase PP1-beta catalytic subunit.	0.726
CSRNP2	PPP1CC	ENSSCAP00000001796	ENSSCAP00000011779	Cysteine and serine rich nuclear protein 2.	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit.	0.679
CSRNP2	ZBTB39	ENSSCAP00000001796	ENSSCAP00000004073	Cysteine and serine rich nuclear protein 2.	Zinc finger and BTB domain-containing protein 39.	0.752
ENSSCAP00000005536	CSRNP2	ENSSCAP00000005536	ENSSCAP00000001796	annotation not available	Cysteine and serine rich nuclear protein 2.	0.471
ENSSCAP00000005536	PPP1CA	ENSSCAP00000005536	ENSSCAP00000012820	annotation not available	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit.	0.502
ENSSCAP00000005536	PPP1CC	ENSSCAP00000005536	ENSSCAP00000011779	annotation not available	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit.	0.502
ENSSCAP00000005536	ZBTB39	ENSSCAP00000005536	ENSSCAP00000004073	annotation not available	Zinc finger and BTB domain-containing protein 39.	0.532
GPD2	CSRNP2	ENSSCAP00000006135	ENSSCAP00000001796	Glycerol-3-phosphate dehydrogenase, mitochondrial isoform X2.	Cysteine and serine rich nuclear protein 2.	0.431
IL20RA	CSRNP2	ENSSCAP00000003701	ENSSCAP00000001796	Interleukin-20 receptor subunit alpha isoform X2.	Cysteine and serine rich nuclear protein 2.	0.443
IL20RA	ZBTB39	ENSSCAP00000003701	ENSSCAP00000004073	Interleukin-20 receptor subunit alpha isoform X2.	Zinc finger and BTB domain-containing protein 39.	0.552
MRPL30	CSRNP2	ENSSCAP00000023414	ENSSCAP00000001796	39S ribosomal protein L30, mitochondrial isoform X1.	Cysteine and serine rich nuclear protein 2.	0.433
NFYA	CSRNP2	ENSSCAP00000023598	ENSSCAP00000001796	Nuclear transcription factor Y subunit alpha isoform X1.	Cysteine and serine rich nuclear protein 2.	0.407